(PFI) A flip angle of less than 90° only partially converts the z-magnetization, leaving a fraction cos a along the longitudinal direction. A flip angle of 90° converts all the z-magnetization into xy-magnetization.
When the repetition time is shorter than T1, the use of a partial flip angle can lead to higher signal intensity. The maximum signal intensity is given by the Ernst angle. For spin echo pulse sequences using an odd number of 180° pulses, an effect similar to the use of a partial flip angle is obtained by using a flip angle greater than 90° to offset the inversion of the remaining longitudinal magnetization by the 180° pulse.

The relaxation effect is the transition of an atom or molecule from a higher energy level to a lower one. The return of the excited proton from the high energy to the low energy level is associated with the loss of energy to the surrounding tissue. The T1 and T2 relaxation times define the way that the protons return to their resting levels after the initial radio frequency (RF) pulse. The T1 and T2 relaxation rates have an effect of the signal to noise ratio (SNR) of MR images.
The relaxation process is a result of both T1 and T2, and can be controlled by the dependency of one of the two biological parameters T1 and T2 in the recorded signal. A T1 weighted spin echo sequence is based on a short repetition time (TR) and a change of it will affect the acquisition time and the T1 weighting of the image. Increased TR results in improved SNR caused by longer recovering time for the longitudinal magnetization. Increased TE improves the T2 weighting, combined with a long TR (of several T1 times) to minimize the T1 effect.

(STIR) Also called Short Tau (t) (inversion time) Inversion Recovery. STIR is a fat suppression technique with an inversion time t = T1 ln2 where the signal of fat is zero (T1 is the spin lattice relaxation time of the component that should be suppressed). To distinguish two tissue components with this technique, the T1 values must be different. Fluid Attenuation Inversion Recovery (FLAIR) is a similar technique to suppress water.
Inversion recovery doubles the distance spins will recover, allowing more time for T1 differences. A 180° preparation pulse inverts the net magnetization to the negative longitudinal magnetization prior to the 90° excitation pulse. This specialized application of the inversion recovery sequence set the inversion time (t) of the sequence at 0.69 times the T1 of fat. The T1 of fat at 1.5 Tesla is approximately 250 with a null point of 170 ms while at 0.5 Tesla its 215 with a 148 ms null point. At the moment of excitation, about 120 to 170 ms after the 180° inversion pulse (depending of the magnetic field) the magnetization of the fat signal has just risen to zero from its original, negative, value and no fat signal is available to be flipped into the transverse plane.
When deciding on the optimal T1 time, factors to be considered include not only the main field strength, but also the tissue to be suppressed and the anatomy. In comparison to a conventional spin echo where tissues with a short T1 are bright due to faster recovery, fat signal is reversed or darkened. Because body fluids have both a long T1 and a long T2, it is evident that STIR offers the possibility of extremely sensitive detection of body fluid. This is of course, only true for stationary fluid such as edema, as the MRI signal of flowing fluids is governed by other factors.

See also Fat Suppression and Inversion Recovery Sequence.

The elimination or reduction of a particular signal by, for example, the application of a narrow band frequency-selective preparation pulse centered at the resonant frequency of the signal. This can also be accomplished using an inversion recovery technique to null the signal as it recovers its longitudinal magnetization.

(SE) The most common pulse sequence used in MR imaging is based of the detection of a spin or Hahn echo. It uses 90° radio frequency pulses to excite the magnetization and one or more 180° pulses to refocus the spins to generate signal echoes named spin echoes (SE).
In the pulse sequence timing diagram, the simplest form of a spin echo sequence is illustrated.
The 90° excitation pulse rotates the longitudinal magnetization (Mz) into the xy-plane and the dephasing of the transverse magnetization (Mxy) starts.
The following application of a 180° refocusing pulse (rotates the magnetization in the x-plane) generates signal echoes. The purpose of the 180° pulse is to rephase the spins, causing them to regain coherence and thereby to recover transverse magnetization, producing a spin echo.
The recovery of the z-magnetization occurs with the T1 relaxation time and typically at a much slower rate than the T2-decay, because in general T1 is greater than T2 for living tissues and is in the range of 100-2000 ms.
The SE pulse sequence was devised in the early days of NMR days by Carr and Purcell and exists now in many forms: the multi echo pulse sequence using single or multislice acquisition, the fast spin echo (FSE/TSE) pulse sequence, echo planar imaging (EPI) pulse sequence and the gradient and spin echo (GRASE) pulse sequence;; all are basically spin echo sequences.
In the simplest form of SE imaging, the pulse sequence has to be repeated as many times as the image has lines.
Contrast values:
PD weighted: Short TE (20 ms) and long TR.
T1 weighted: Short TE (10-20 ms) and short TR (300-600 ms)
T2 weighted: Long TE (greater than 60 ms) and long TR (greater than 1600 ms)
With spin echo imaging no T2* occurs, caused by the 180° refocusing pulse. For this reason, spin echo sequences are more robust against e.g., susceptibility artifacts than gradient echo sequences.

See also Pulse Sequence Timing Diagram to find a description of the components.